Best of luck to you if you decide to emark on this endeavor. Tearing down the engine is one thing. Rebuilding it is an entirely different ball game. I did this on my own but it was quite a challenge. I spent countless hours (over the course of several months) researching. The actual rebuild process took 4 months of rebuilding time (turn around for Nickies alone is 1-2 months), and I spent nearly $12k (LNE nickies, R&R rods, etc).
If you are going to do it on your own, I highly suggest you attend Jake Raby's M96 engine rebuild class this spring, I think he still has a few slots, and it is in a month or two. Well worth the money compared to the cost of the rebuild. Unforatunately the timing of the class didn't work out for me, otherwise I would have gone; I may still go some day. You are going to learn stuff in the class you never would by just reading a manual or reading someone else's thread. Best parts suppliers are Sunset and Sonnen Porsche, but sometimes rmeuropean, autohausaz, pelicanparts, and suncoast porsche.
Here's my thread, it's not all in there, and I certainly am missing some things a veteran at M96 rebuilding would be doing, so don't take my thread as a "DIY" on how to do it. You need to invent, have tons of spare time and money to be successful (and even then, one big mistake, and you need to be prepared/accept the fact that you might lose it all).
http://forums.rennlist.com/rennforums/996-forum/672370-engine-rebuild-part-3-the-finale.html
There are other options. You can buy a used engine, there was one for sale with low miles on RL.com a few days ago for $7,000, and I've seen them go for $5000-$6000.
For roughly the same cost as it will take for you to properly rebild your engine, you can buy a new Porsche engine (about $14k last time I checked), granted it won't have the upgraded internals such as Nickasil, JE pistons, etc.
You can also send your car to Jake at flat 6 innovations, and he'll turn it around in perfection for about $16-20k, if you can wait - he did say he has a few slots open in the very near future.
If you cut a ton of corners you might be able to do it yourself for $8-10k which would still include a lot of new parts, but why would you want to go cheap if you spend $4000 on new cylinders and pistons????... you're throwing money away if you don't go all the way and an old used part fails and destroys the engine. There are alternative sleeve supplies that do cast iron with stock pistons, but their options are just $1000 less than LNE. Hartech in the UK does the same thing LNE does.
No, you can't go without new injectors, engine manangement wouldn't need to be reprogramed regardles.
Yes I would update the LNE bearing. Replace as many parts as you can afford. You need to ask yourself during the rebuild, do I really want to reuse that drive chain that only costs $40, or do I really want to button up the bearing carrier without properly measuring and re-aligning bore if necessary and using the same bearings? Do I really want to reuse the same rods without upgraded ARP bolts? Do I really want to put the same old tired variocam actuators in the engine and know I'll be tearing into it again in short time? Jake tells us the easiest way to lose $12,000 in parts rebuilding the engine is to not spend $1000 on a critical piece, such as upgraded rods and bolts, or re-using chains, or reusing the IMS paddle, etc.